FastQCFastQC Report
Wed 8 May 2024
EGAF00007962329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464048
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8940.19265248422576975No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6590.14201117125814572No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6340.1366237975381857No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6020.1297279591766369No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5770.12434058545667688No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5250.11313484811916008No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC4870.10494604006482088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)