FastQCFastQC Report
Wed 8 May 2024
EGAF00007962331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440218
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38720.8795642159112077No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6210.14106647161179234No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6090.1383405494550427No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5400.12266649705373248No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5400.12266649705373248No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5370.12198501651454506No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC4800.10903688626998442No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)