FastQCFastQC Report
Wed 8 May 2024
EGAF00007962332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449845
Total Bases19.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13720.30499394235792326No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13150.2923229112249775No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10640.23652591448165478No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10630.2363036156898487No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8360.1858417899498716No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8060.17917282619568964No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG7560.16805788660538631No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7510.16694639264635597No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6980.15516455668063445No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6760.150273983260901No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6410.14249352554768863No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6270.13938134246240372No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6240.13871444608698552No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5810.12915559803932466No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5660.12582111616223365No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5530.12293123186875479No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5230.1162622681145728No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT4650.10336893818982094No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4610.10247974302259666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)