FastQCFastQC Report
Wed 8 May 2024
EGAF00007962333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449845
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25990.5777545599039668No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14390.3198879614089298No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14170.31499738798919624No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13440.2987695761873534No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12100.26898153808534053No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10870.24163878669319433No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9210.2047371872533873No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9110.20251419933532663No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8550.1900654669941869No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7890.17539374673498648No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7810.17361535640053796No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7650.1700585757316409No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6670.14827329413464638No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6460.14360501950671897No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5800.1289332992475186No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5080.1129277862374818No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5000.11114939590303327No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4930.10959330436039079No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4600.10225744423079061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)