FastQCFastQC Report
Wed 8 May 2024
EGAF00007962334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425303
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13050.3068400646127584No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12100.2845030484148948No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10090.23724262466994123No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10070.2367723716973546No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7980.18763093606205458No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG7880.18527967119912156No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7440.1749341058022163No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6950.16341290797384453No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6510.15306734257693927No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6350.14930531879624645No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6340.14907019230995314No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5840.13731386799528805No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5830.13707874150899477No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5710.13425722367347515No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5110.12014963449587705No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5070.11920912855070386No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5030.11826862260553064No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4950.11638761071518425No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT4780.11239046044819812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)