FastQCFastQC Report
Wed 8 May 2024
EGAF00007962335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425303
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39930.9388600597691529No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23930.5626576816998704No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13260.3117777208249178No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12840.30190240840059906No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12050.28332741598342825No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11500.27039545923729674No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9650.2268970592730359No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8410.19774137497266656No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8120.1909227068701608No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7900.1857499241717082No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7170.16858569067229714No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7030.16529391986419092No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6470.15212683663176604No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6160.14483791555667372No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5090.11967938152329044No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5070.11920912855070386No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5060.11897400206441054No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4600.1081581836949187No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4500.10580691883198567No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)