FastQCFastQC Report
Wed 8 May 2024
EGAF00007962337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455141
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26640.5853131227465774No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14450.3174840324207224No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14340.31506719895592794No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12530.2752993028534015No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11330.2489338468738259No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10870.23882708874832193No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9060.1990591926457955No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8890.19532408638202226No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8380.18411876759070264No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC8130.17862596426162441No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8050.17686826719631937No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7690.1689586304024467No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7000.15379849321419078No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6940.152480220415212No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5720.12567534016931017No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5520.12128109750604758No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5260.11556858204380621No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT4840.10634067245095477No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4730.10392383898616034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)