FastQCFastQC Report
Wed 8 May 2024
EGAF00007962339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429351
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37570.8750416326036273No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24760.5766843445106684No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14050.3272380872526208No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13020.3032483911764501No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12420.28927381093790394No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11460.26691448255623024No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10300.23989696076170777No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8220.19145174926808137No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7930.18469736881945076No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7690.17910753672403232No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7060.16443422747355893No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6910.1609405824139224No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6500.15139128591758258No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6260.14580145382216414No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5360.12483958346434502No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5170.12041429972213875No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4770.11109791289644139No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4620.10760426783680485No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4590.10690553882487755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)