FastQCFastQC Report
Wed 8 May 2024
EGAF00007962340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462628
Total Bases20.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG26600.5749760066403244No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22250.48094797547921875No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16300.35233492136230404No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14920.32250533906291884No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12610.27257321217046954No Hit
CATCATCGGATCATCGAAGTACACGCGAGTTTCGGCAGAAGCAT12140.2624138616772007No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11230.24274362987108433No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG10670.23063887183655118No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10560.2282611515083393No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9970.21550792429338472No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9450.20426779183274685No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG9340.20189007150453495No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9200.1988638819959017No Hit
CAGCGCCGGCAGGGTTTCTACGGAGTGAGACGGGAAAGCCCAGT9050.19562153609379457No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8330.18005827576368053No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8220.17768055543546868No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7500.1621172951053546No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7310.15801032362935233No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7030.15195794461208573No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6910.14936406789040005No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6780.1465540347752406No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6670.14417631444702872No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6650.1437440016600811No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT5710.12342530067354332No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5710.12342530067354332No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5690.12299298788659571No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5680.12277683149312191No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT5670.12256067509964809No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT5100.11023976067164115No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5050.10915897870427212No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5000.10807819673690308No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4880.1054843200152174No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4810.10397122526090076No Hit
GCTGGTACCGTTCAGAGAAGCATAGGTGGAGCCCGGGTAGGTAG4770.10310659968700553No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)