FastQCFastQC Report
Wed 8 May 2024
EGAF00007962341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462628
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32370.6996982456747106No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT27070.5851353571335932No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22970.49651123580933276No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16460.35579342365788497No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14700.31774989840649503No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13950.30153816889595964No Hit
GGCGACAAACAGAGCAACGTTGTCATCCAGA12280.26544005118583397No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT10820.23388121773865828No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10310.22285724167149415No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10080.21788564462159662No Hit
GAAAGCGCACTGGATTGGTTCCTGCGCCCGA9860.21313020396517288No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9360.20232238429148258No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC8820.19064993904389704No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8630.18654296756789474No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8530.18438140363315667No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8210.17746439904199485No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8200.17724824264852107No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7950.1718443328116759No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7930.1714120200247283No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7420.16038804395756417No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7360.15909110559672135No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7300.1577941672358785No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6670.14417631444702872No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6450.13942087379060497No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6270.13553005870807647No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6240.13488158952765505No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5950.12861305411691468No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA5770.12472223903438615No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5530.11953448559101482No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5380.11629213968890771No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5370.11607598329543391No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5290.11434673214764347No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5190.1121851682129054No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5130.11088822985206256No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5060.1093751350977459No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4990.10786204034342929No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4830.10440353804784838No Hit
CCGGCTCGTTACGCCAACGCCATGGCGGTGG4750.10267428690005793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)