FastQCFastQC Report
Wed 8 May 2024
EGAF00007962342

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962342
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437880
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG24980.5704759294783959No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19890.4542340367223897No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16050.366538777747328No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13410.30624828720197317No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12290.2806705033342468No Hit
CATCATCGGATCATCGAAGTACACGCGAGTTTCGGCAGAAGCAT11330.2587466885904814No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10810.24687128893760846No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG9780.22334886270211018No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9630.21992326664839681No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9070.20713437471453366No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG8770.20028318260710698No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8630.1970859596236412No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8610.19662921348314608No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8450.19297524435918517No Hit
CAGCGCCGGCAGGGTTTCTACGGAGTGAGACGGGAAAGCCCAGT8370.1911482597972047No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8150.18612405225175846No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7610.17379190645839043No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7110.1623732529460126No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6900.1575774184708139No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6570.15004110715264457No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6210.14181967662373254No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5980.13656709600803874No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5970.13633872293779117No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5950.13588197679729608No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5750.13131451539234495No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT5670.1294875308303645No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT5590.12766054626838402No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5240.11966748880971956No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT5230.119439115739472No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5080.11601351968575865No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4650.10619347766511374No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4600.10505161231387594No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4540.10368137389239061No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4420.10094089704941994No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)