FastQCFastQC Report
Wed 8 May 2024
EGAF00007962344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467634
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG26720.5713870248955379No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21380.45719515689620516No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16810.3594691575035177No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14370.3072915998409012No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13870.29659947736905357No Hit
CATCATCGGATCATCGAAGTACACGCGAGTTTCGGCAGAAGCAT11920.2549001997288478No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10840.23180521518965688No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG10770.23030831804359822No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10750.2298806331447243No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10310.22047156536949838No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG9990.2136286069875159No Hit
CAGCGCCGGCAGGGTTTCTACGGAGTGAGACGGGAAAGCCCAGT9170.19609352613368575No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9010.19267204694269452No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8780.1877536706056446No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8780.1877536706056446No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8290.1772753905832339No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7950.1700047473023775No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7550.1614510493248994No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7190.15375272114516908No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6860.14669592031374964No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6710.14348828357219534No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6530.13963911948233018No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6510.13921143458345628No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6150.131513106403726No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6110.13065773660597818No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT6090.13023005170710428No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT5970.12766394231386083No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5920.12659473006667607No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5770.12338709332512178No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT5280.11290881330271109No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5270.11269497085327415No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5110.1092734916622829No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5090.108845806763409No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT4860.10392743042635909No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4860.10392743042635909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)