FastQCFastQC Report
Wed 8 May 2024
EGAF00007962345

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962345
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467634
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31890.6819435712544426No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT27130.580154565322453No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22280.4764409773455309No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16740.35797226035745905No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15170.32439899579585746No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12540.2681584315939389No Hit
GGCGACAAACAGAGCAACGTTGTCATCCAGA12110.25896320626814984No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10690.22859757844810258No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT10680.22838373599866563No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9690.20721333350440732No Hit
GAAAGCGCACTGGATTGGTTCCTGCGCCCGA9660.20657180615609644No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC9640.20614412125722253No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9520.20357801186397909No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9360.20015653267298786No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8850.18925056775170326No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA8760.1873259857067707No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8670.1854014036618381No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7970.1704324322012514No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7860.16808016525744493No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7580.16209257667321025No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7120.15225582399911042No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6960.1488343448081192No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6910.1477651325609344No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6910.1477651325609344No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6860.14669592031374964No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6190.1323684762014738No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6150.131513106403726No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5970.12766394231386083No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5890.12595320271836521No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5820.12445630557230654No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5530.11825487453863491No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5440.11633029249370234No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA5440.11633029249370234No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5330.11397802554989585No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5140.10991501901059376No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5130.1097011765611568No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5070.10841812186453507No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG4910.10499664267354385No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA4780.10221669083086346No Hit
TCTCTGCCGCTGATCGGCGAAGCTGACTGTC4720.10093363613424174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)