FastQCFastQC Report
Wed 8 May 2024
EGAF00007962346

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962346
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442233
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG25710.5813677405349669No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20310.459260163759828No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15720.35546872350095987No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13600.30753019335960907No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12690.2869528054215764No Hit
CATCATCGGATCATCGAAGTACACGCGAGTTTCGGCAGAAGCAT11710.26479254148831044No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10230.23132602044623535No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10010.2263512673183593No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG9780.2211503890483071No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG9140.20667837994903138No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9100.20577387938032665No Hit
CAGCGCCGGCAGGGTTTCTACGGAGTGAGACGGGAAAGCCCAGT9090.20554775423815047No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8700.19672887369327932No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG8580.19401537198716515No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8190.185196491442294No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC7620.17230735833825156No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7480.169141606347785No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7200.16281010236685187No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6950.15715697381244728No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6850.15489572239068544No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6220.14064983843358592No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6150.13906696243835265No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT6130.13861471215400026No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5610.12685620476083875No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT5580.12617782933431018No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5490.12414270305472455No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5490.12414270305472455No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5320.12029857563772943No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT5310.12007245049555325No Hit
GTCGCCCGGCAGCGGTGCAGTCGGAGCCCACGGGGAGTTACCGT5300.11984632535337707No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4800.1085400682445679No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4770.10786169281803935No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4640.10492206596974898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)