FastQCFastQC Report
Wed 8 May 2024
EGAF00007962347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442233
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37460.847064782591982No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30220.6833501796564254No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT25320.5725488599900957No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20250.4579034129067709No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15490.3502678452309077No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13990.3163490739044802No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12220.2763249237392958No Hit
GGCGACAAACAGAGCAACGTTGTCATCCAGA11970.2706717951848912No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT9860.2229593901857166No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9720.21979363819525002No Hit
GAAAGCGCACTGGATTGGTTCCTGCGCCCGA9370.2118792582190836No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9300.21029638222385033No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC8870.20057300111027443No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG8460.19130187028105095No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8420.1903973697123462No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8020.1813523640252989No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA7830.1770559863239514No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7680.17366410919130865No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7600.1718551080538992No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7050.15941822523420912No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6860.15512184753286162No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6540.14788584298322377No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6120.13838858701182408No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6070.13725796130094317No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG5860.1325093333152433No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5680.12843908075607202No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5650.12776070532954348No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5570.125951704192134No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA5270.11916794992684852No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5240.11848957450031995No Hit
TTCGAACAGCCGACCCTGACCTTCGGCGCGG5080.11487157222550104No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5020.11351482137244392No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5000.11306257108809156No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4900.11080131966632974No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4870.1101229442398012No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4670.10560044139627753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)