FastQCFastQC Report
Wed 8 May 2024
EGAF00007962349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453766
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10310.22720961905475506No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9180.20230691589938427No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8230.18137101501655037No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6130.135091655170286No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5170.1139353763834223No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4830.10644252764640805No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)