FastQCFastQC Report
Wed 8 May 2024
EGAF00007962351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459897
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9640.20961215228627278No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8960.19482623283039463No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8380.18221471329449854No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5760.125245435390968No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5420.11785247566302891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)