FastQCFastQC Report
Wed 8 May 2024
EGAF00007962352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436678
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7880.18045333174558828No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6060.1387750241596783No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4650.10648578586509969No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4480.10259275713454766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)