FastQCFastQC Report
Wed 8 May 2024
EGAF00007962353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436678
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38730.8869235454957658No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9080.20793353454948496No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7890.18068233343562076No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5950.1362560055693211No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5320.12182889909727534No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4900.1122108281159115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)