FastQCFastQC Report
Wed 8 May 2024
EGAF00007962355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458968
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29490.6425284551428422No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10200.22223771591919264No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9390.20458942671384497No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5100.11111885795959632No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5100.11111885795959632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)