FastQCFastQC Report
Wed 8 May 2024
EGAF00007962362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457304
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT38220.835767891818134No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT24390.5333432465056067No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23750.5193481797666323No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG23330.5101639172191802No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC21170.46293056697514123No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG19740.4316603397302451No Hit
GAAAGTGCGCAGTTCACGCGGCGCGCTGGAGTTTTCAAACAGGC17660.3861763728285779No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14480.3166383849692983No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT14120.30876615992862516No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG13360.29214701817609295No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG13310.29105365358711055No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12870.28143204520406556No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA12780.2794639889438973No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12680.2772772597659325No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12410.2713730909854276No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12300.2689676888896664No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11230.2455696866854434No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA10500.22960656368630059No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10330.2258891240837605No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10150.2219530115634239No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT9890.21626751570071548No Hit
CTGCTCTGGGGTGCGAACAGAATGGGTAGCCACAACCTTACCGT9250.202272448961741No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9040.197680317688015No Hit
AAATTCACGAACGATGCGTGGGCCCGGCGGGGTCGGTGCCACCG8630.18871472805835943No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8470.1852159613736158No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8210.17953046551090743No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7950.173844969648199No Hit
GGTGCCGTTTGCTTTGGCGATGTCGTTTACGGTATCACCCGGTT7840.17143956755243775No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7670.16772212794989766No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7530.16466070710074698No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7330.16028724874481745No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT7080.15482042579990554No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6550.14323076115669225No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6450.1410440319787275No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6440.14082535906093102No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6420.14038801322533806No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6370.13929464863635568No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6220.13601455486940853No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT6030.13185976943127548No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5160.11283522558298201No Hit
ATCCTTCATCAGCAGTTCTTCGGAAAACAGGGCATCATACGGCA5080.11108584224061017No Hit
CGGACCGCTAGATACAGACGCCAGGGTTTGTTTGGTTTTTTCCA4990.10911778598044189No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT4950.108243094309256No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4790.10474432762451237No Hit
CGGTTTATTGCCATCTTCCTTACCCGGTTTGTTGCCATCCTCTT4790.10474432762451237No Hit
GTCTGCATTTAAATAGTTAACTCAATCAGACGGACGGGTCGGCA4730.10343229011773351No Hit
GTCTGCACCGTTTGCACCGGTAGCGTGATAATTCCACGCAAAGT4640.10146423385756521No Hit
AGTGATAACGTAACGGGTTTCGATCATGTCTTCCGGCTGCACGG4630.10124556093976872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)