FastQCFastQC Report
Wed 8 May 2024
EGAF00007962364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432045
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT35330.8177388929393928No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG23630.5469337684731914No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT23060.5337406983068893No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21980.5087433022023169No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19720.4564339362797857No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18870.4367600597160018No Hit
GAAAGTGCGCAGTTCACGCGGCGCGCTGGAGTTTTCAAACAGGC16460.38097883322339104No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14270.3302896689002303No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT13650.315939311877235No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG12730.2946452337140807No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA12600.29163628788667845No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12150.28122070617643996No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12050.2789061324630536No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12010.27798030297769905No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11940.27636010137832867No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11340.26247265909801065No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA10600.24534481361895172No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10430.24141003830619495No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10220.23654943350808363No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9700.22451365019847466No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT8960.20738580471941578No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8780.20321957203532037No Hit
CTGCTCTGGGGTGCGAACAGAATGGGTAGCCACAACCTTACCGT8570.19835896723720908No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8120.18794338552697057No Hit
AAATTCACGAACGATGCGTGGGCCCGGCGGGGTCGGTGCCACCG8000.18516589707090697No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7920.1833142381001979No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7690.17799071855940932No Hit
GGTGCCGTTTGCTTTGGCGATGTCGTTTACGGTATCACCCGGTT7530.17428740061799117No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7240.1675751368491708No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7140.16526056313578447No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7080.16387181890775265No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6280.14535522920066196No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6260.1448923144579847No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6240.1444293997153074No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT6100.14118899651656658No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6090.14095753914522793No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5750.13308798851971437No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5710.13216215903435985No Hit
ATCCTTCATCAGCAGTTCTTCGGAAAACAGGGCATCATACGGCA5280.1222094920667986No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT5220.1208207478387668No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5200.12035783309608952No Hit
CGGTTTATTGCCATCTTCCTTACCCGGTTTGTTGCCATCCTCTT5140.11896908886805772No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT5000.11572868566931685No Hit
AACGCTCTGGGTGTGTTTCGGACCAGAGGAAACGCTGGCCAGGG4740.10971079401451238No Hit
CGGACCGCTAGATACAGACGCCAGGGTTTGTTTGGTTTTTTCCA4660.1078591350438033No Hit
GTCTGCATTTAAATAGTTAACTCAATCAGACGGACGGGTCGGCA4590.10623893344443287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)