FastQCFastQC Report
Wed 8 May 2024
EGAF00007962365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432045
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39790.9209688805564236No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT35290.8168130634540383No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28180.6522468724322699No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG25430.5885960953141456No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC25380.5874388084574523No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24130.5585066370401232No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG23580.5457764816164983No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA23350.5404529620757097No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23010.5325834114501962No Hit
GGCGAACCGCCACGCGCACGTGGTGCAGTAC15860.367091390943073No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC15780.365239731972364No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG14880.34440856855188695No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14310.33121549838558484No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13830.3201055445613304No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12790.2960339779421125No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT12540.29024754365864663No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12160.2814521635477786No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG10770.2492795889317085No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9660.22358782071312017No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT9540.22081033225705657No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9000.20831163420477034No Hit
TTCCGCAACCACCACCTGATCGGCAAACAGA8850.20483977363469083No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8630.19974771146524087No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8440.19535002140980687No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8310.1923410755824046No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG8280.19164670346838872No Hit
GAACTGAACCCATCCGGTAACTTCGAATCCG8130.1881748428983092No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7350.17012116793389576No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7330.16965825319121852No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7090.1641032762790913No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6660.15415060931153005No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6520.15091020611278919No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6510.15067874874145054No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG6490.15021583399877328No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6270.14512377182932332No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6230.1441979423439688No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5870.13586547697577797No Hit
TCCCAGTCTTCCCAGAAATCCGAGAACCTGA5780.13378236063373028No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5740.13285653114837576No Hit
GGTAAAGAAGACAACAAAAAACCGGGCAAAG5620.13007904269231213No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5520.12776446897892582No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC5370.1242926084088463No Hit
TGCCCGGACTTCAAGCTGCGTCTGATGAAGG5270.12197803469545995No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5240.12128366258144406No Hit
AACTATATCGACTCCGTTCTGAACGAGGTTC4930.11410848406994642No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4700.10878496452915785No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4660.1078591350438033No Hit
CCGCCACAGACCTCCGGCCAGGTTTACCTGC4640.10739622030112606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)