FastQCFastQC Report
Wed 8 May 2024
EGAF00007962368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437443
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT36360.8311940069906252No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT23790.5438422834517869No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG23470.5365270446663908No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20700.4732045089303064No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19700.4503443877259437No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18750.4286272725817992No Hit
GAAAGTGCGCAGTTCACGCGGCGCGCTGGAGTTTTCAAACAGGC16770.38336423259716124No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT14590.3335291683716507No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC13560.30998324353115725No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG12820.29306675383992886No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12670.2896377356592745No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA12570.2873517235388382No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12550.28689452111475094No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12340.2820938956618348No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11820.27020663263556627No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11610.26540600718265006No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10990.25123273203594526No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10380.23728805810128406No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA10260.23454484355676053No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT9730.22242897931844832No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9680.22128597325823024No Hit
CTGCTCTGGGGTGCGAACAGAATGGGTAGCCACAACCTTACCGT8690.19865445326591125No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8670.19819725084182396No Hit
AAATTCACGAACGATGCGTGGGCCCGGCGGGGTCGGTGCCACCG8290.18951040478416617No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8110.18539558296738087No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7820.17876614781811573No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7770.1776231417578976No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7710.17625153448563585No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7670.17533712963746134No Hit
GGTGCCGTTTGCTTTGGCGATGTCGTTTACGGTATCACCCGGTT7620.1741941235772432No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7000.16002084843053838No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6810.15567742540170948No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6750.1543058181294477No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6550.1497337938885752No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT6480.14813358540426982No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6400.1463047757079208No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT6310.14424736479952815No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6030.13784653086230664No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT5250.12001563632290377No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT5200.11887263026268564No Hit
CGGACCGCTAGATACAGACGCCAGGGTTTGTTTGGTTTTTTCCA4950.113157599961595No Hit
GTCTGCATTTAAATAGTTAACTCAATCAGACGGACGGGTCGGCA4840.11064298662911512No Hit
ATCCTTCATCAGCAGTTCTTCGGAAAACAGGGCATCATACGGCA4740.10835697450867884No Hit
CGGTTTATTGCCATCTTCCTTACCCGGTTTGTTGCCATCCTCTT4700.10744256966050433No Hit
AACGCTCTGGGTGTGTTTCGGACCAGAGGAAACGCTGGCCAGGG4560.10424215269189357No Hit
GTCTGCACCGTTTGCACCGGTAGCGTGATAATTCCACGCAAAGT4470.10218474178350094No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4470.10218474178350094No Hit
GAAATCCTGCTTCAGTTCGTTCCATTCCTCGTCCGTGAAGGTGT4410.10081313451123917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)