FastQCFastQC Report
Wed 8 May 2024
EGAF00007962369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437443
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36730.8396522518362393No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT36590.8364518348676285No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28610.6540280676568146No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG26100.5966491634338645No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC25030.5721888337451966No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24530.5607587731430153No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA24160.5523005282974011No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG22820.5216679658835551No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21360.4882921889251857No Hit
GGCGAACCGCCACGCGCACGTGGTGCAGTAC15900.3634759271493657No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG15850.3623329210891476No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14700.33604378170413063No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC14650.33490077564391246No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC14580.3333005671596071No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13030.297867379292845No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT12620.2884947295990563No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12380.2830083005100093No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG10410.23797386173741494No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT10290.2352306471928914No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9670.22105737204618658No Hit
TTCCGCAACCACCACCTGATCGGCAAACAGA9200.21031311508013617No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8940.20436948356700188No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8720.1993402569020421No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8520.19476823266116958No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG8480.19385382781299507No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8460.1933966253889078No Hit
GAACTGAACCCATCCGGTAACTTCGAATCCG8240.18836739872394803No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7780.17785174296994122No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7430.1698507005484143No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7420.16962209933637068No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7080.1618496581268874No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7040.1609352532787129No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6960.15910644358236387No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG6520.14904799025244433No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6520.14904799025244433No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6330.1447045672236154No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6260.14310435873931004No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6030.13784653086230664No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5830.1332745066214341No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5430.12413045813968906No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC5260.12024423753494741No Hit
TCCCAGTCTTCCCAGAAATCCGAGAACCTGA5250.12001563632290377No Hit
GGTAAAGAAGACAACAAAAAACCGGGCAAAG5230.11955843389881654No Hit
CCGCCACAGACCTCCGGCCAGGTTTACCTGC4970.11361480238568225No Hit
TGCCCGGACTTCAAGCTGCGTCTGATGAAGG4960.11338620117363862No Hit
AACTATATCGACTCCGTTCTGAACGAGGTTC4880.11155739147728963No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4770.10904277814480971No Hit
TCCGAAGCGGATCTGAACAAAGCGAGCCTGG4590.10492795632802444No Hit
CAGATCGTGATCAAAATTACCGATCAGGGTT4550.10401355147984993No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4440.10149893814737004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)