FastQCFastQC Report
Wed 8 May 2024
EGAF00007962371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433428
Total Bases13.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24840.5731055677067471No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20610.47551150364074307No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13380.30870179130097736No Hit
CAGCCGCAGCAGCAACAGCCTCAGCAACAGC10730.2475613019924878No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10030.23141098406194338No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8640.19934106702843377No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8570.19772603523537935No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8450.19495740930442887No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7860.18134499847725574No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7180.16565611820186973No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6850.15804239689175595No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6410.1478907684782709No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5990.13820057771994426No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5970.13773914006478583No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5410.12481888572035031No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5410.12481888572035031No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5160.11905091503087019No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5150.11882019620329098No Hit
ATGGGTTACGGCCTGCTGGACATTGCAAACC5140.11858947737571177No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5060.11674372675507812No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4530.10451562889338022No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4450.10266987827274657No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4440.10243915944516736No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4360.10059340882453373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)