FastQCFastQC Report
Wed 8 May 2024
EGAF00007962373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408102
Total Bases12.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37030.9073711964165821No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22130.5422663941857673No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18920.46360958779912864No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12840.31462722554655453No Hit
CAGCCGCAGCAGCAACAGCCTCAGCAACAGC9650.23646049271995725No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9110.2232285065988405No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8690.2129369618379719No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7770.19039357807606921No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7730.1894134309559865No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6090.1492273990325948No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6080.1489823622525741No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5810.14236636919201573No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5700.13967096461178824No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5450.13354504511127122No Hit
ATGGGTTACGGCCTGCTGGACATTGCAAACC5040.12349853713042326No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4750.11639247050982351No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4730.11590239694978216No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4650.11394210270961672No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4510.11051158778932718No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4490.11002151422928581No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4380.10732610964905831No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4380.10732610964905831No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4300.10536581540889288No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4270.10463070506883083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)