FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007962374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437447
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20120.45994143290501477No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13590.3106662064204349No Hit
CGGGAAGTGCTGACCACGTTTCAGCAGCTGTTTATGTTCCTGGT10910.2494016417988922No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10840.24780144794683698No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9510.21739776475778783No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9390.21465457529712173No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG8290.18950867190768253No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7900.18059330616051775No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7020.1604765834489664No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6940.15864779047518898No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6170.14104565810258157No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6090.13921686512880418No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5430.12412932309514067No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5260.1202431380258637No Hit
GCCGATGCCGGTACCGATGTTCTGTTTGTTCTGTGCTTTCTGCT5140.1174999485651976No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5130.11727134944347543No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5040.11521395734797586No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4780.10927038018319933No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG4720.10789878545286628No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4690.10721298808769976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)