FastQCFastQC Report
Wed 8 May 2024
EGAF00007962375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437447
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23860.545437504429108No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20320.4645134153394583No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13950.3188957748024332No Hit
CAGCCGCAGCAGCAACAGCCTCAGCAACAGC10850.24803004706855916No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9490.21694056651434343No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9420.21534037266228825No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8510.19453785258557035No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8310.18996587015112687No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8050.18402229298635037No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7140.16321977290963247No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6800.15544740277107857No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6760.15453300628418984No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5580.1275583099209733No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5570.1273297107992511No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5540.12664391343408457No Hit
ATGGGTTACGGCCTGCTGGACATTGCAAACC5470.12504371958202937No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5460.1248151204603072No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5220.119328741538975No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5070.11589975471314239No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4860.11109917315697675No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4760.10881318193975498No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4560.10424119950531151No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4490.10264100565325629No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)