FastQCFastQC Report
Wed 8 May 2024
EGAF00007962376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428188
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT17470.40799835586237826No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT8730.20388240679327774No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7710.18006109465935524No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7220.16861752314403952No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6890.16091062804188813No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5310.12401094846189056No Hit
ACGCAGATCTACCTGCGCGGCTGGGGATGCGTCAGACGGCTGCG5220.12190906797948564No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4750.11093258101581548No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4570.10672882005100563No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4570.10672882005100563No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4560.10649527777518288No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA4360.10182443225872748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)