FastQCFastQC Report
Wed 8 May 2024
EGAF00007962377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428188
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG17660.41243565910301083No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10490.24498584733808515No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9690.22630246527226358No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9040.21112221734378356No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8710.20341532224163217No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7480.17468962231543153No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7250.16931814997150782No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6010.14035890776948443No Hit
GAATGCGACGAAGTTCAGAGCGGTCTGCGCG5280.12331032163442227No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5160.12050781432454905No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4910.11466925742897979No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4760.11116612329163825No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4740.11069903873999272No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA4620.10789653143011947No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC4480.1046269395686007No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)