FastQCFastQC Report
Wed 8 May 2024
EGAF00007962379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403007
Total Bases12.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38150.9466336813008212No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14490.3595471046408623No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10470.2597969762311821No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG8570.21265139315198No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8080.20049279541050155No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7500.18610098583895565No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6680.16575394472056318No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5450.13523338304297444No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4800.11910463093693163No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4570.1133975340378703No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4510.11190872615115867No Hit
GAATGCGACGAAGTTCAGAGCGGTCTGCGCG4480.11116432220780283No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4270.10595349460431208No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA4080.10123893629639187No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC4070.1009908016486066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)