FastQCFastQC Report
Wed 8 May 2024
EGAF00007962380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431240
Total Bases18.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT16410.38053056302754845No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT8930.20707726555978112No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7770.1801780910861701No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7620.17669974955941006No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6070.140756887116223No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5660.1312494202764122No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4960.11501715981819868No Hit
ACGCAGATCTACCTGCGCGGCTGGGGATGCGTCAGACGGCTGCG4940.114553380947964No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4670.10829236619979594No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4480.10388646693256655No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4400.10203135145162787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)