FastQCFastQC Report
Wed 8 May 2024
EGAF00007962381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431240
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG16470.38192189963825246No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10560.24487524348390685No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9510.22052685279658657No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9040.2096280493460718No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8530.19780168815508764No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7830.18156942769687412No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6550.15188758000185512No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6180.1433076709025137No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5370.12452462665800945No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5040.11687227529913738No Hit
GAATGCGACGAAGTTCAGAGCGGTCTGCGCG4940.114553380947964No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4940.114553380947964No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4840.11223448659679065No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)