FastQCFastQC Report
Wed 8 May 2024
EGAF00007962383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409018
Total Bases12.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35710.8730667110004938No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15030.3674654905163098No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10240.25035573006566947No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9100.22248409605445238No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8910.2178388237192495No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6860.16771878010258717No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6500.15891721146746599No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5350.1308010894386066No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4830.11808771252120934No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4750.11613180838007128No Hit
GAATGCGACGAAGTTCAGAGCGGTCTGCGCG4650.11368692820364874No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4600.11246448811543747No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4380.10708575172730785No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4170.10195150335682047No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)