FastQCFastQC Report
Wed 8 May 2024
EGAF00007962384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457327
Total Bases20.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15270.3338967522144986No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12730.2783566244722048No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11100.24271473147222883No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10290.2250031159323635No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9370.20488621926980036No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8580.18761192757042552No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7540.1648710878649194No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7430.16246580674222164No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7010.15328200609192108No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6780.14825278192628033No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6550.14322355776063955No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6490.14191158623916802No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6150.1344770809508295No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5830.12747989950298147No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5830.12747989950298147No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5620.12288799917783118No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5550.12135736573611441No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5540.12113870381586916No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5020.10976828396311611No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4910.10736300284041835No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4690.10255244059502282No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)