FastQCFastQC Report
Wed 8 May 2024
EGAF00007962385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457327
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31100.6800385719627312No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15340.3354273856562154No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13290.2906016920059388No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11200.24490135067468136No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9520.20816614807347916No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9290.20313692390783838No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8710.1904545325336138No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7560.1653084117054099No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7310.15984186369927864No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7180.15699925873609036No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6820.1491274296072613No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6650.14541017696309205No Hit
ATGAGCACCAACCCGAAACCGCAGCGTAAAA6480.14169292431892277No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6480.14169292431892277No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6440.14081827663794177No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6280.13731968591401775No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6030.13185313790788647No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6010.131415814067396No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5970.13054116638641497No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5750.12573060414101944No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5440.11895208461341665No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5220.11414152236802114No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5140.11239222700605911No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5130.11217356508581386No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4770.10430173595698483No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4620.10102180715330605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)