FastQCFastQC Report
Wed 8 May 2024
EGAF00007962386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432188
Total Bases19 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14540.33642766573805843No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11570.2677075717049062No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10070.23300045350634446No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9420.2179607022869677No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8820.20407785500754302No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8700.20130128555165805No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7130.16497450183716345No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6910.1598841245013744No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6860.15872722056142233No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6750.1561820318935278No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6600.15271132007367164No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6520.15086027376974837No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6320.14623265800994012No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6030.13952261515821818No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5890.1362832841263524No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5280.12216905605893733No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5240.12124353290697566No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5150.11916110581506197No Hit
TTCGGAAGTCTTACGGGTTGCACGAACGCCCAGGCGCGGGCCAC4800.11106277823539755No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4650.10759206641554138No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4500.10412135459568521No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4500.10412135459568521No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4360.10088202356381944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)