FastQCFastQC Report
Wed 8 May 2024
EGAF00007962387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432188
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40460.9361666682092052No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28450.6582783418327209No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15250.35285570168537767No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12190.2820531805603117No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10050.23253769193036364No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9380.21703517913500606No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8640.19991300082371563No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7150.16543726341314427No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6990.1617351708052977No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6960.16104102844132648No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6510.15062889298175794No Hit
ATGAGCACCAACCCGAAACCGCAGCGTAAAA6480.14993475061778672No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6290.14553851564596887No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6270.14507575406998807No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6250.14461299249400725No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5890.1362832841263524No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5870.13582052255037158No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5640.13049876442659214No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5490.12702805260673594No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5220.12078077133099484No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5190.1200866289670236No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4920.11383934769128248No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4780.11060001665941672No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4670.1080548279915222No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4590.10620378168759892No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4510.10435273538367562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)