FastQCFastQC Report
Wed 8 May 2024
EGAF00007962388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464132
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15380.3313712478346677No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13020.28052364413572No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11380.24518886868390888No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10400.22407418579197297No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9090.19584945662009945No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8920.1921867055061922No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7630.16439288823007248No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7250.15620556221075038No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7050.15189644325321244No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6900.148664604035059No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6820.1469409564520438No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6800.14651004455629002No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6150.13250540794429172No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6120.13185904010066102No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5940.12798083303887686No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5810.12517990571647722No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5520.11893168322804719No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5110.1100979893650944No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5050.10880525367783303No Hit
TTCGGAAGTCTTACGGGTTGCACGAACGCCCAGGCGCGGGCCAC4810.10363431092878751No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4810.10363431092878751No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4690.10104883955426473No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4660.10040247171063404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)