FastQCFastQC Report
Wed 8 May 2024
EGAF00007962389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464132
Total Bases14.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31270.6737307490110571No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16140.3477458998733119No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13440.2895727939465497No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11490.24755888411055477No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9740.20985409323209778No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9710.20920772538846705No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8890.1915403376625615No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7360.15857557763739627No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7260.15642101815862727No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7200.1551282824713659No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6770.14586367671265932No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6760.14564822076478243No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6690.14414002912964416No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6510.14026182206786No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6420.13832271853696793No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6400.13789180664121414No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6380.13746089474546036No Hit
ATGAGCACCAACCCGAAACCGCAGCGTAAAA6320.13616815905819896No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5930.12776537709099997No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5880.1266880973516155No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5790.12474899382072342No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5730.12345625813346202No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5230.11268346073961717No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5140.11074435720872511No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5120.11031344531297133No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4870.10492704661604889No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)