FastQCFastQC Report
Wed 8 May 2024
EGAF00007962390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438689
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14980.341471976730668No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12280.27992495822781055No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10580.24117313176304855No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10300.23479047799238184No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9110.20766419946704842No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8810.20082564185561982No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7060.160934055788953No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6830.15569116162019106No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6700.15272778665523867No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6660.15181597897371485No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6590.15022031553104817No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6520.14862465208838152No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6170.14064633487504816No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6150.14019043103428624No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5740.13084440229866715No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5360.12218222932419096No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5290.12058656588152428No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4830.11010077754400042No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4740.10804921026057183No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4740.10804921026057183No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4600.10485788337523849No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4540.10349017185295277No Hit
TTCGGAAGTCTTACGGGTTGCACGAACGCCCAGGCGCGGGCCAC4430.10098270072876228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)