FastQCFastQC Report
Wed 8 May 2024
EGAF00007962391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438689
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37720.8598346436769556No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29490.6722302132034311No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14510.33075823647276315No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12850.2929182176895249No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10580.24117313176304855No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9160.2088039590689532No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8880.2024213052982865No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7350.16754466148000063No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7170.16344152691314348No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6800.1550073058590482No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6680.1522718828144768No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6380.14543332520304816No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6260.14269790215847672No Hit
ATGAGCACCAACCCGAAACCGCAGCGTAAAA6050.1379109118304767No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5920.13494753686552433No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5790.13198416190057194No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5610.12788102733371476No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5580.1271971715725719No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5550.12651331581142905No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5540.12628536389104808No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5210.11876295051847663No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5110.11648343131466711No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5040.11488776787200045No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG4940.1126082486681909No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4580.1044019795344766No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4570.10417402761409564No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4450.10143860456952421No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)