FastQCFastQC Report
Wed 8 May 2024
EGAF00007962392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446596
Total Bases19.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG21400.4791802882247042No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17250.3862551388727172No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG15040.3367696978925024No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14460.3237825685854777No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12800.2866125088446829No Hit
TTTCGGAGACAGTGCACGACGTTTACGACCCTGAACCGGTTCCG11650.26086216625316844No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11390.2550403496672608No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG11220.25123377728416735No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9380.21003322913774417No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT8280.18540246665890425No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7430.166369604743437No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6990.15651729975190104No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6880.15405422350401704No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG6700.1500237350983887No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG6660.14912807100824907No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6640.14868023896317925No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4990.11173409524491934No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG4980.11151017922238443No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4770.10680794274915135No Hit
ATCCAGGGAATCGGTACCGTTCTGCTGAGCACGCTGTTCTGCGT4620.10344920241112773No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4530.10143395820831355No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)