FastQCFastQC Report
Wed 8 May 2024
EGAF00007962393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446596
Total Bases13.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA30300.6784655482807728No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG21360.47828462413456463No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18310.4099902372614175No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14860.332739209486874No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG14550.32579781278829184No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12650.28325376850665923No Hit
CGCGACGGCGCAATGAAACACCGTATCACCA11650.26086216625316844No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT11270.2523533573968419No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG11210.25100986126163244No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10360.2319769993461652No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA9490.21249630538562816No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8720.19525477165044022No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC8640.19346344347016095No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7510.16816093292371628No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT7390.16547394065329737No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7380.1652500246307625No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5330.11934724001110625No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5150.11531675160547789No Hit
CTGGCATACCGTTCTCTGACCCGCAAAAAAC4970.11128626319984952No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4840.10837535490689572No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG4830.10815143888436081No Hit
TCCGTCTATAACTCTGGCCGTAAAGGTCCGG4600.10300137036605791No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4590.10277745434352302No Hit
GGTTTCGAATCTTATCCAGAACCGGTACAGG4480.100314378095639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)