FastQCFastQC Report
Wed 8 May 2024
EGAF00007962394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422841
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG19430.4595107853779553No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG16310.3857241847408364No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG14440.34149952346153756No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13100.30980912446995446No Hit
TTTCGGAGACAGTGCACGACGTTTACGACCCTGAACCGGTTCCG11450.2707873645176319No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11330.2679494183392812No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG10370.2452458489124754No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10080.23838747898146112No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8620.20385913381152726No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT7190.17004027518618112No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG7010.165783355918655No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6840.16176293216599147No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6610.15632353532415258No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6230.14733670575937527No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5850.138349876194598No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG5400.12770757802578275No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG5200.12297766772853153No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4770.11280836058944142No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4730.11186237852999117No Hit
ATCCAGGGAATCGGTACCGTTCTGCTGAGCACGCTGTTCTGCGT4580.10831494580705277No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4360.10311204448007644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)