FastQCFastQC Report
Wed 8 May 2024
EGAF00007962395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422841
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40290.9528404293812567No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26590.6288415740195487No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19080.4512334423577657No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16860.39873143805827727No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG13680.32352586433198294No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13450.3180864674901441No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11330.2679494183392812No Hit
CGCGACGGCGCAATGAAACACCGTATCACCA11260.2662939497352433No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT10200.24122542515981185No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9720.22987364044640893No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9030.21355544992089226No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA8230.1946358087318874No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC7450.17618915857260767No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT7410.17524317651315743No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7380.17453368996856974No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6910.1634184007700294No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG5030.118957243975868No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4990.11801126191641775No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4860.11493682022320446No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4780.11304485610430398No Hit
CTGGCATACCGTTCTCTGACCCGCAAAAAAC4550.10760545926246509No Hit
TCCGTCTATAACTCTGGCCGTAAAGGTCCGG4480.10594999065842717No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4270.1009835848463134No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)