FastQCFastQC Report
Wed 8 May 2024
EGAF00007962396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450599
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG20960.465158599996893No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18120.4021313851118178No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG15480.34354270648625496No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14310.31757726936810776No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12890.2860636619255702No Hit
TTTCGGAGACAGTGCACGACGTTTACGACCCTGAACCGGTTCCG12080.26808759007454525No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG11690.25943244436849616No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11030.24478527471210546No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9820.2179321303420558No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT9230.20483844837649437No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG7620.16910823148742007No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG7100.157568037212688No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7070.15690225677376116No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6970.15468298864400498No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6820.15135408644937073No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4930.10940991879697913No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG4900.10874413835805227No Hit
ATCCAGGGAATCGGTACCGTTCTGCTGAGCACGCTGTTCTGCGT4880.10830028473210104No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4720.10474945572449118No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)