FastQCFastQC Report
Wed 8 May 2024
EGAF00007962398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427513
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG19130.44747177278819594No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15940.37285415882090134No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG14380.33636404039175416No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13800.3227972014886097No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12520.2928565914954633No Hit
TTTCGGAGACAGTGCACGACGTTTACGACCCTGAACCGGTTCCG11780.2755471763431755No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG11030.2580038501753163No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG9630.22525630799531243No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8370.19578352003330893No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT8050.18829836753502233No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7040.16467335496230523No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6400.14970304996573203No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6390.14946913895016056No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG6340.1482995838723033No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6180.14455700762316No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5180.12116590606601436No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTACCG4840.11321293153658486No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG4760.1113416434120132No Hit
ATCCAGGGAATCGGTACCGTTCTGCTGAGCACGCTGTTCTGCGT4550.10642951208501261No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4450.10409040192929807No Hit

[OK]Adapter Content

Adapter graph