FastQCFastQC Report
Wed 8 May 2024
EGAF00007962399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427513
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37020.8659385796455312No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29050.6795115002350806No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18940.44302746349233824No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16780.39250268412890366No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14640.342445726796612No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG13530.3164816040681804No Hit
CGCGACGGCGCAATGAAACACCGTATCACCA11350.2654890026736029No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11260.2633838035334598No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10640.24888132056802953No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT9750.22806324018216992No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8840.20677733776516735No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC8320.19461396495545163No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA7700.18011148199002136No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT7010.16397162191559086No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6840.15999513465087611No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6540.1529778041837324No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4990.1167215967701567No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4790.11204337645872757No Hit
CTGGCATACCGTTCTCTGACCCGCAAAAAAC4710.11017208833415593No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG4600.1075990671628699No Hit
TCCGTCTATAACTCTGGCCGTAAAGGTCCGG4430.10362257989815515No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4410.10315475786701223No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4280.10011391466458329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)